This function checks the alignment for colocalisation based on the product of Z scores and LD.
Usage
coloc_check_alignment(D, thr = 0.2, do_plot = TRUE)
Arguments
- D
Dataset containing beta, varbeta, and LD.
- thr
Threshold for alignment check.
- do_plot
Logical indicating whether to generate a plot.
Value
Mean of values greater than zero, indicating alignment quality.