Creates a Manhattan plot

Usage

manhattan(
  df,
  group = "group",
  position = "position",
  value = "value",
  yline = NULL,
  logy = FALSE,
  highlight_colour = NULL,
  annotate_column = NULL,
  annotate = NULL,
  colours = c("gray10", "gray60"),
  title = NULL,
  y_breaks = NULL,
  ylims = NULL,
  ...
)

Arguments

df: A data frame.
group: Column name for groups (X-axis sections). Default is "group".
position: Column name for positions within groups. Default is "position".
value: Column name for values (Y-axis). Default is "value".
yline: Optional. Horizontal line(s) at specified Y-axis value(s).
logy: Logical. Whether to -log10 transform the Y-axis values. Default is FALSE.
highlight_colour: Optional. Colour for points above the first yline.
annotate_column: Optional. Column name to use for labels.
annotate: Optional. Vector of values from annotate_column to label.
colours: Character vector of colours for alternating groups.
title: Optional. Plot title.
...: Additional arguments.

Value

A ggplot object.