Create a Miami plot with a central buffer and fixed axis labels

Usage

miamiplot(
  df,
  group = "group",
  position = "position",
  value_top = "value_top",
  value_bottom = "value_bottom",
  yline_top = NULL,
  yline_bottom = NULL,
  logy = FALSE,
  gap_size = 0.2,
  highlight_colour = NULL,
  annotate_column = NULL,
  annotate = NULL,
  annotate_top = NULL,
  annotate_bottom = NULL,
  colours = c("gray10", "gray60"),
  title = NULL,
  x_axis_title = NULL,
  y_axis_title = "Value",
  y_breaks = NULL,
  ylims = NULL,
  transformation_from = -0.1,
  transformation_to = 0.1,
  transformation = 10,
  ...
)

Arguments

df: A data frame.
group: Column name for groups (X-axis sections). Default is "group".
position: Column name for positions within groups. Default is "position".
value_top: Column name for the top plot values.
value_bottom: Column name for the bottom plot values.
yline_top: Optional. Horizontal line(s) for the top plot.
yline_bottom: Optional. Horizontal line(s) for the bottom plot.
logy: Logical. Whether to -log10 transform the Y-axis values. Default is FALSE.
gap_size: Numeric. The vertical distance to separate the top and bottom plots. Default is 0.2.
highlight_colour: Optional. Colour for points outside the yline thresholds.
annotate_column: Optional. Column name to use for labels.
annotate: Optional. Vector of values from annotate_column to label regardless of Y-axis value.
annotate_top: Optional. Vector of values to label on the top plot.
annotate_bottom: Optional. Vector of values to label on the bottom plot.
colours: Character vector of colours for alternating groups.
title: Optional. Plot title.
x_axis_title: Optional. X-axis title.
y_axis_title: Optional. Y-axis title.
y_breaks: Optional. Y-axis breaks.
ylims: Optional. Y-axis limits.
transformation_from: Numeric. Start of the squished region. Default = -0.1.
transformation_to: Numeric. End of the squished region. Default = 0.1.
transformation: Numeric. Factor for the squished region. Default = 10.
...: Additional arguments.

Value

A ggplot object.